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problem in parameters of gapseq doall

Status: Open.

#293 In jotech/gapseq;

· naserelmi opened on May 13, 2026

Workaround for Modelseed IDs

Status: Open.

#292 In jotech/gapseq;

· BactoBloom opened on May 13, 2026

bioconda recipe to gapseq v2.0.1

Status: Open.

#291 In jotech/gapseq;

· brovolia opened on May 11, 2026

Feature request: non-sequence input, ie externally generated annotations

Status: Open.

#290 In jotech/gapseq;

· Gsmith535 opened on Apr 21, 2026

Flexible database file input and gapfill error

Status: Open.

#289 In jotech/gapseq;

· Dylan1021 opened on Mar 9, 2026

The gapseq adapt command can add reactions but fails to find metabolites.

Status: Open.

#282 In jotech/gapseq;

· Fake-star opened on Dec 21, 2025

Impact of different atmosphere on gapseq adapt (growth medium and Biolog-like test)

Status: Open.

#273 In jotech/gapseq;

· LucoDevro opened on Aug 6, 2025

Metabolites are not as expected

Status: Open.

#270 In jotech/gapseq;

· vvvaeeee opened on Jul 8, 2025

The detection problem of the anaerobic methane oxidation pathway

Status: Open.

#268 In jotech/gapseq;

· king72858 opened on Jul 1, 2025

infinite solver loop when growing on computed draft medium

Status: Open.

#266 In jotech/gapseq;

· mbiomeai opened on May 31, 2025

Subunit detection is returning wrong numbers

Status: Open.

#241 In jotech/gapseq;

· Porthmeus opened on Nov 7, 2024

Archaea reconstruction does not predict Methanogenesis anymore

Status: Open.

#234 In jotech/gapseq;

· cdiener opened on Sep 5, 2024